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Creators/Authors contains: "Chen, Jianlin"

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  1. The known sandwich compound [η 5 -(CH 2 ) 3 N 2 (BPh) 2 CMe] 2 Fe in which adjacent C 2 units are replaced by isoelectronic BN units can be considered as a boraza analogues of ferrocene similar to borazine, B 3 N 3 H 6 , considered as a boraza analogue of benzene. In this connection, the related bis(1,2,3,5-tetramethyl-1,2-diaza-3,5-diborolyl) derivatives (Me 4 B 2 N 2 CH) 2 M (M = Ti, V, Cr, Mn, Fe, Co, Ni) for all of the first row transition metals have been optimized using density functional theory for comparison with the isoelectronic tetramethylcyclopentadienyl derivatives (Me 4 C 5 H) 2 M. Low-energy sandwich structures having parallel B 2 N 2 C rings in a trans orientation are found for all seven metals. The 1,2-diaza-3,5-diborolyl ligand appears to be a weaker field ligand than the isoelectronic cyclopentadienyl ligand as indicated by higher spin ground states for some (η 5 -Me 4 B 2 N 2 CH) 2 M sandwich compounds relative to the corresponding metallocenes (η 5 -Me 4 C 5 H) 2 M. Thus (η 5 -Me 4 B 2 N 2 CH) 2 Cr has a quintet ground state in contrast to the triplet ground state of (η 5 -Me 4 C 5 H) 2 Cr. Similarly, the sextet ground state of (η 5 -Me 4 B 2 N 2 CH) 2 Mn lies ∼18 kcal mol −1 below the quartet state in contrast to the doublet ground state of the isoelectronic (Me 4 C 5 H) 2 Mn. These sandwich compounds are potentially accessible by reaction of 1,2-diaza-3,5-diborolide anions with metal halides analogous to the synthesis of [η 5 -(CH 2 ) 3 N 2 (BPh) 2 CMe] 2 Fe. 
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  2. Abstract Understanding how proteins fold has remained a problem of great interest in biophysical research. Atomistic computer simulations using physics-based force fields can provide important insights on the interplay of different interactions and energetics and their roles in governing the folding thermodynamics and mechanism. In particular, generalized Born (GB)-based implicit solvent force fields can be optimized to provide an appropriate balance between solvation and intramolecular interactions and successfully recapitulate experimental conformational equilibria for a set of helical and β-hairpin peptides. Here, we further demonstrate that key thermodynamic properties and their temperature dependence obtained from replica exchange molecular dynamics simulations of these peptides are in quantitative agreement with experimental results. Useful lessons can be learned on how the interplay of entropy and sequentially long-range interactions governs the mechanism and cooperativity of folding. These results highlight the great potential of high-quality implicit solvent force fields for studying protein folding and large-scale conformational transitions. 
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